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This sample represents a MAG derived from the metagenomic sample SAMN17312148

Identifiers
BioSample: SAMEA114588702; SRA: ERS16687851
Organism
Segatella copri
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Segatella
Attributes
broad-scale environmental contexthominid body
collection date2011/2014
environmental mediumfeces
geographic locationGermany
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (GER)
sample nameH07683-L1_cleanbin_000034
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:27Z
ENA-LAST-UPDATE2023-11-07T00:47:27Z
External IdSAMEA114588702
INSDC center nameICMB
INSDC first public2023-11-07T00:47:27Z
INSDC last update2023-11-07T00:47:27Z
INSDC statuspublic
Submitter IdH07683-L1_cleanbin_000034
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score98.33
completeness softwareMAGSCoT
contamination score0
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312148
scientific_nameSegatella copri
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588702
ID:
38180341

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