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This sample represents a MAG derived from the metagenomic sample SAMN17312070

Identifiers
BioSample: SAMEA114588811; SRA: ERS16687960
Organism
Wujia chipingensis
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Wujia
Attributes
broad-scale environmental contexthominid body
collection date2011
environmental mediumfeces
geographic locationCote d'Ivoire
investigation typemetagenome-assembled genome
isolation sourceFeces of Homo sapiens (CIV)
sample nameH07687-L1_cleanbin_000004
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T00:47:11Z
ENA-LAST-UPDATE2023-11-07T00:47:11Z
External IdSAMEA114588811
INSDC center nameICMB
INSDC first public2023-11-07T00:47:11Z
INSDC last update2023-11-07T00:47:11Z
INSDC statuspublic
Submitter IdH07687-L1_cleanbin_000004
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score73.33
completeness softwareMAGSCoT
contamination score8.33
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourceHuman gut
sample derived fromSAMN17312070
scientific_nameWujia chipingensis
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588811
ID:
38180450

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