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This sample represents a MAG derived from the metagenomic sample SAMN17312182

Identifiers
BioSample: SAMEA114588917; SRA: ERS16688066
Organism
Absicoccus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Absicoccus; unclassified Absicoccus
Attributes
broad-scale environmental contexthominid body
collection date2017
environmental mediumfeces
geographic locationDemocratic Republic of the Congo
investigation typemetagenome-assembled genome
isolation sourceFeces of Pan paniscus
sample nameH07689-L1_cleanbin_000045
ENA-CHECKLISTERC000011
ENA-FIRST-PUBLIC2023-11-07T04:41:31Z
ENA-LAST-UPDATE2023-11-07T04:41:31Z
External IdSAMEA114588917
INSDC center nameICMB
INSDC first public2023-11-07T04:41:31Z
INSDC last update2023-11-07T04:41:31Z
INSDC statuspublic
Submitter IdH07689-L1_cleanbin_000045
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades
binning parametersrefined binning from maxbin2 metabat2 vamb and concoct
binning softwareMAGSCoT
completeness score86.67
completeness softwareMAGSCoT
contamination score1.67
contamination softwareMAGSCoT
geographic location (latitude)not collected
geographic location (longitude)not collected
local environmental contexthominid gut
metagenomic sourcePan paniscus gut
sample derived fromSAMN17312182
scientific_nameAbsicoccus sp.
taxonomic classificationgtdtbk
taxonomic identity markergtdtbtk marker gene sets
BioProject
PRJEB68160 Functional host-specific adaptation of the intestinal microbiome in hominids
Retrieve all samples from this project

Submission
EBI; 2023-11-09
Accession:
SAMEA114588917
ID:
38180556

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