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96d63388-5640-4ae1-9c1f-8b6c0c049979-asg-bin.1

Identifiers
BioSample: SAMEA114659240; SRA: ERS17075107
Organism
Methyloprofundus sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methyloprofundus; unclassified Methyloprofundus
Attributes
broad-scale environmental contextaquatic biome
collected byROXANNE BEINART
collection date2021-06-16
depth1902-12-07 00:00:00.000
environmental mediumadult bivalve tissue
geographic locationUSA
host life stageadult
hostBathymodiolus brooksi
host sexnot collected
host taxonomy ID206348 (206348)
identified byROXANNE BEINART
investigation typemetagenome-assembled genome
isolation sourceBivalve: Bathymodiolus brooksi
tissueWHOLE ORGANISM
project nameASG
sample collection device or methodCollected with remotely operated vehicle ROV JASON
sample name96d63388-5640-4ae1-9c1f-8b6c0c049979
specimen voucherNOT_PROVIDED
16S recoveredYes
16S recovery softwarePROKKA (version 1.14.5)
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-11-22T10:25:00Z
ENA-LAST-UPDATE2023-11-22T10:25:00Z
External IdSAMEA114659240
GALUniversity of Rhode Island
GAL_sample_idNOT PROVIDED
INSDC center nameTree of Life Programme
INSDC first public2023-11-22T10:25:00Z
INSDC last update2023-11-22T10:25:00Z
INSDC statuspublic
MAG coverage softwareMinimap2 (version 2.24-r1122)
Submitter Id96d63388-5640-4ae1-9c1f-8b6c0c049979
assembly qualitySingle contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
assembly softwaremetaMDBG
barcoding centerUNIVERSITY OF RHODE ISLAND
binning parameterscoverage; graph
binning softwareMetaBat (version 2.15-15-gd6ea400); DASTOOL (version 1.1.5)
collecting institutionUNIVERSITY OF RHODE ISLAND
completeness score97.03
completeness softwarecheckM (version 1.2.1); checkM_DB (release 2015-01-16)
contamination score0.69
geographic location (latitude)28.12
geographic location (longitude)-89.14
geographic location (region and locality)MISSISSIPPI CANYON
habitatCold seep
identifier_affiliationUNIVERSITY OF RHODE ISLAND
local environmental contextmarine cold seep biome
metagenomic sourcemollusc metagenome
number of standard tRNAs extracted42
sample derived fromSAMEA114659236
scientific_nameMethyloprofundus sp.
sequencing methodPacbio Sequel II
specimen_idURI0000017
tRNA extraction softwarePROKKA (version 1.14.5)
taxonomic classificationGTDB-TK (version 2.3.2); GTDB (release 214)
taxonomic identity markerani_screen
tolidxbBatBroo1.Methyloprofundus_sp_1
BioProject
PRJEB70556 xbBatBroo1.metagenome
Retrieve all samples from this project

Submission
EBI; 2023-11-23
Accession:
SAMEA114659240
ID:
38388435

BioProject Nucleotide

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