MAG for uncultured delta proteobacterium

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured delta proteobacterium
cellular organisms; Bacteria; delta/epsilon subdivisions; Deltaproteobacteria; environmental samples

Attributes

broad-scale environmental context	Freshwater
collection date	2020-07-30
environmental medium	not collected
geographic location	Denmark
isolation source	sediment
project name	Microflora Danica
sample name	MFD02979.bin.2.74
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114813711
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T09:59:25Z
INSDC status	public
Submitter Id	MFD02979.bin.2.74
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	94.11
completeness software	CheckM2
contamination score	4.13
geographic location (latitude)	56.323
geographic location (longitude)	10.0517
local environmental context	Standing freshwater
metagenomic source	sediment metagenome
sample derived from	ERS14381601
scientific_name	uncultured delta proteobacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured delta proteobacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project