MAG for uncultured Alphaproteobacteria bacterium

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

broad-scale environmental context	Freshwater
collection date	2021-07-22
environmental medium	not collected
geographic location	Denmark
isolation source	sediment
project name	Microflora Danica
sample name	MFD05377.bin.1.141
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114820765
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T09:59:49Z
INSDC status	public
Submitter Id	MFD05377.bin.1.141
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S and 5S rRNA genes and at least 18 tRNAs
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	91.52
completeness software	CheckM2
contamination score	2.54
geographic location (latitude)	56.93737774
geographic location (longitude)	8.85114178
local environmental context	Standing freshwater
metagenomic source	sediment metagenome
sample derived from	ERS14381677
scientific_name	uncultured Alphaproteobacteria bacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured Alphaproteobacteria bacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project