MAG for uncultured Gammaproteobacteria bacterium

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

broad-scale environmental context	Freshwater
collection date	2021-11-05
environmental medium	not collected
geographic location	Denmark
isolation source	sediment
project name	Microflora Danica
sample name	MFD10007.bin.c.3
ENA first public	2024-12-25
ENA-CHECKLIST	ERC000011
External Id	SAMEA114834649
INSDC center name	Center for Microbial Communities
INSDC last update	2023-12-07T10:00:31Z
INSDC status	public
Submitter Id	MFD10007.bin.c.3
assembly quality	Single contiguous sequence without gaps or ambiguities with a consensus error rate equivalent to Q50 or better
binning parameters	Ensemble iterative binning using coverage and kmer
binning software	MetaBAT2, GraphMB, SemiBin2, DAS Tool, mmlong2
completeness score	92.07
completeness software	CheckM2
contamination score	1.47
geographic location (latitude)	55.8579
geographic location (longitude)	12.4931
local environmental context	Standing freshwater
metagenomic source	sediment metagenome
sample derived from	ERS15928292
scientific_name	uncultured Gammaproteobacteria bacterium
taxonomic identity marker	multi-marker approach

Description: HQ MAG for uncultured Gammaproteobacteria bacterium, recovered from an environmental sample from Denmark

BioProject: PRJEB58634 MFD-LR MAGs — long-read metagenome assembled genomes from the Microflora Danica sequencing project
Retrieve all samples from this project