MEFUS

Organism: Fusobacterium varium
cellular organisms; Bacteria; Fusobacteriati; Fusobacteriota; Fusobacteriia; Fusobacteriales; Fusobacteriaceae; Fusobacterium

Attributes

broad-scale environmental context	In vitro culture derivated from samples from the gut of chinchilla (Chinchilla lanigera)
collection date	2021-08
environmental medium	Incubated at 37ºC
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	The genomes here correspond to 24 metagenome-assembled genomes of the 30 bacteria identified that grow together with Monocercomonoides exilis in TYSGM-9 medium.
project name	PRJEB70623
sample name	ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238940
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2024-02-29T00:36:26Z
ENA-LAST-UPDATE	2024-02-29T00:36:26Z
External Id	SAMEA115094468
INSDC center name	BIOCEV
INSDC first public	2024-02-29T00:36:26Z
INSDC last update	2024-02-29T00:36:26Z
INSDC status	public
Submitter Id	ena-SAMPLE-TAB-10-01-2024-09:53:06:039-238940
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaSPAdes v.3.14.0, k-mers set 21,33,55,77,99,127, default parameters otherwise
binning parameters	coverage and kmer
binning software	MaxBin v2.2.7
completeness score	99.1
completeness software	MaxBin v2.2.7 marker set 107
contamination score	4.7
geographic location (latitude)	+49.980897
geographic location (longitude)	+14.487539
local environmental context	TYSGM-9 medium
metagenomic source	rodent metagenome
sample derived from	SAMEA115084009-SAMEA115084017
scientific_name	Fusobacterium varium
sequencing method	HiSeq4000
taxonomic identity marker	16S gene

BioProject: PRJEB70623 Comprehensive analysis of the microbial consortium in the culture of flagellate Monocercomonoides exilis
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BioSample