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Metagenome-assembled genome: SRR1514963_concoct_22_1705335389

Identifiers
BioSample: SAMEA115107613; Sample name: SRR1514963_concoct_22_1705335389; SRA: ERS17743330
Organism
uncultured Flavobacteriales bacterium
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; environmental samples
Attributes
broad-scale environmental contextwater
collection date2008-09
geographic locationBrazil
environmental mediumamazon
investigation typemetagenome-assembled genome
project nameIllumina HiSeq 2500 sequencing: Metagenomic analysis from lakes in Amazon river
isolation sourcefreshwater metagenome
assembly softwareMetaSPades_v3.14.1
sample derived fromSAMN02905733
geographic location (longitude)-23.04 DD
binning parametersdefault
contamination score0.25 %
ENA-FIRST-PUBLIC2024-01-15T16:34:33Z
ENA-LAST-UPDATE2024-01-15T16:34:33Z
completeness softwareCheckM2_v1.0.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured Flavobacteriales bacterium
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity markermulti-marker approach
completeness score82.11 %
geographic location (latitude)-3.86 DD
scientific_nameuncultured Flavobacteriales bacterium
local environmental contextriver
metagenomic sourcefreshwater metagenome
sequencing methodIllumina HiSeq 2500
ENA-FIRST-PUBLIC2024-01-15
ENA-LAST-UPDATE2024-01-15
Description

This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR1514963 of study SRP044326.

BioProject
PRJEB54020
Retrieve all samples from this project

Submission
EBI; 2024-02-04
Accession:
SAMEA115107613
ID:
39809398

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