Herschel Island surface seawater MAG - HER19_SIP_2... - BioSample

Herschel Island surface seawater MAG - HER19_SIP_2000_bin_23

Organism: uncultured Pseudomonadales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; environmental samples

Attributes

broad-scale environmental context	marine biome [ENVO:00000447]
collection date	2019-08-03
environmental medium	sea water [ENVO:00002149]
geographic location	Canada
investigation type	metagenome
isolation source	sea water
project name	HER19_HER22_MetaG
sample name	HER19_SIP_2000_bin_23
ENA first public	2024-01-25
ENA-CHECKLIST	ERC000047
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status	public
Submitter Id	HER19_SIP_2000_bin_23
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Megahit v1.2.9
binning parameters	MetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 11
binning software	MetaWrap v1.3.2
completeness score	93.64
completeness software	CheckM v1.2
contamination score	0.86
geographic location (latitude)	69.5646
geographic location (longitude)	-138.907
local environmental context	marine photic zone [ENVO:00000209]
metagenomic source	marine metagenome
sample derived from	ERS16475400,ERR12120021
scientific_name	uncultured Pseudomonadales bacterium
sequencing method	Illumina HiSeq3000
taxonomic identity marker	Multi-marker approach

Description: This sample represents a manually-refined metagenome-assembled genome recovered a metagenome from an Illumina paired-end read metagenome of a surface seawater sample collected around Herschel Island, Canada. The metagenome sample and related assembly can be found under ERS16475400, ERR12120021

BioProject: PRJEB67368 FRAM_RAS_WSC_F4_metagenomes
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