U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Herschel Island surface seawater MAG - HER19_SLC_50_PacBio_bin_12_1

Identifiers
BioSample: SAMEA115135880; SRA: ERS17855475
Organism
uncultured Pseudomonadales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; environmental samples
Attributes
broad-scale environmental contextmarine biome [ENVO:00000447]
collection date2019-08-02
environmental mediumsea water [ENVO:00002149]
geographic locationCanada
investigation typemetagenome
isolation sourcesea water
project nameHER19_HER22_MetaG
sample nameHER19_SLC_50_PacBio_bin_12_1
ENA first public2024-01-25
ENA-CHECKLISTERC000047
INSDC center nameMAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC statuspublic
Submitter IdHER19_SLC_50_PacBio_bin_12_1
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareFlye v2.9.2
binning parametersMetaWrap v1.3.2 was used with the following parameters: -m 200 -t 20 --metabat2 �maxbin2 �concoct �run-checkm ; Followed by MetaWrap bin_refinement with the following parameters: -c 50 -x 36
binning softwareMetaWrap v1.3.2
completeness score51.72
completeness softwareCheckM v1.2
contamination score0
geographic location (latitude)69.5666
geographic location (longitude)-138.9517
local environmental contextmarine photic zone [ENVO:00000209]
metagenomic sourcemarine metagenome
sample derived fromERS16475409,ERR12120029
scientific_nameuncultured Pseudomonadales bacterium
sequencing methodPacBio Sequel II
taxonomic identity markerMulti-marker approach
Description

This sample represents a manually-refined metagenome-assembled genome recovered a metagenome from an PacBio HiFi read metagenome of a surface seawater sample collected around Herschel Island, Canada. The metagenome sample and related assembly can be found under ERS16475409, ERR12120029

BioProject
PRJEB67368 FRAM_RAS_WSC_F4_metagenomes
Retrieve all samples from this project

Submission
EBI; 2024-01-27
Accession:
SAMEA115135880
ID:
39632171

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center