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metabat2_XCR1_HET_6748_bwa.117 MAG

Identifiers
BioSample: SAMEA115146454; SRA: ERS17877314
Organism
Candidatus Scatomonas merdigallinarum
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnospiraceae incertae sedis; Candidatus Scatomonas
Attributes
broad-scale environmental contextGallus gallus
collection date2021-09-14
environmental mediumCaecal contents
geographic locationUnited Kingdom
isolation sourceCaecal contents from a chicken (Gallus gallus)
project nameMetagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample namemetabat2_XCR1_HET_6748_bwa.117 MAG
ENA first public2024-05-09
ENA-CHECKLISTERC000011
External IdSAMEA115146454
INSDC center nameThe Roslin Institute (University of Edinburgh)
INSDC last update2024-01-26T11:57:50Z
INSDC statuspublic
Submitter Idmetabat2_XCR1_HET_6748_bwa.117 MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareMEGAHIT
binning parametersDefault MetaBAT 2 parameters
binning softwareMetaBAT 2
completeness score98.78
completeness softwareCheckM2
contamination score0.79
geographic location (latitude)55.86
geographic location (longitude)-3.2
local environmental contextGastrointestinal tract microbiota
metagenomic sourcechicken gut metagenome
sample derived fromERS16138925
scientific_nameCandidatus Scatomonas merdigallinarum
taxonomic identity markerGTDB-Tk
Description

This sample represents a metagenome assembled genome from the metagenomic sample ERS16138925

BioProject
PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

Submission
EBI; 2024-05-11
Accession:
SAMEA115146454
ID:
41371308

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