Metagenome-assembled genome: SRR5720235_binner13_3

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Result Filters

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

broad-scale environmental context	aqua
collection date	2003-07-15
environmental medium	ocean
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Temporal sampling of marine metagenomes from Station ALOHA and BATS
sample name	SRR5720235_binner13_3
ENA first public	2024-02-06
ENA-CHECKLIST	ERC000047
INSDC center name	EMG
INSDC status	public
Submitter Id	SRR5720235_binner13_3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.15.3
binning parameters	default
binning software	MGnify-genomes-generation-pipeline_v1.0.0
broker name	EBI-EMG
completeness score	81.19
completeness software	CheckM2_v1.0.1
contamination score	1.5
geographic location (latitude)	31.66
geographic location (longitude)	-64.16
local environmental context	water
metagenomic source	marine metagenome
sample derived from	SAMN07137085
scientific_name	uncultured Alphaproteobacteria bacterium
sequencing method	NextSeq 550
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR5720235 of study SRP109831.