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Metagenome-assembled genome: ERR2762144_binner12_Refined_24

Identifiers
BioSample: SAMEA115300913; Sample name: ERR2762144_binner12_Refined_24; SRA: ERS18298099
Organism
uncultured Parvibaculum sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Parvibaculaceae; Parvibaculum; environmental samples
Attributes
broad-scale environmental contextwater
collection datenot provided
environmental mediumtara
investigation typemetagenome-assembled genome
project nameAnalysis of the genes and genomes present in Tara Oceans Polar Circle virus size fractions through shotgun DNA sequencing. Seawater from different depths was precipitaded then filtered to retain small particle sizes (Virus particles). The DNA was extracted and submitted to high throughput sequencing.
geographic locationnot provided
isolation sourcemarine metagenome
assembly softwaremetaspades_v3.14.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured Parvibaculum sp.
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived fromSAMEA4397747
geographic location (longitude)116.4105 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score100 %
contamination score0.38 %
geographic location (latitude)78.0391 DD
scientific_nameuncultured Parvibaculum sp.
local environmental contextocean
metagenomic sourcemarine metagenome
sequencing methodIllumina HiSeq 2000
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR2762144 of study ERP010882.

BioProject
PRJEB47400
Retrieve all samples from this project

Submission
EBI; 2024-03-08
Accession:
SAMEA115300913
ID:
40330500

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