Metagenome-assembled genome: ERR770975_binner12_Re... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115324267; Sample name: ERR770975_binner12_Refined_4; SRA: ERS18321453

Organism: uncultured Cellvibrionales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cellvibrionales; environmental samples

Attributes

broad-scale environmental context	water
collection date	2014-06-21T11:15:00+00
environmental medium	osd
investigation type	metagenome-assembled genome
project name	Sequencing of amplicon and metagenome samples from the main OSD event, representing joint effort of marine sampling stations around the world. The OSD campaign aims to analyze marine microbial community compositions and embedded functional traits on a single day, the solstice on 2014-06-21.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.10.0
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Cellvibrionales bacterium
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
sample derived from	SAMEA3275570
geographic location (longitude)	-8.6668 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	97.78 %
contamination score	0.47 %
geographic location (latitude)	41.1416 DD
scientific_name	uncultured Cellvibrionales bacterium
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina MiSeq
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR770975 of study ERP009703.