Metagenome-assembled genome: ERR770992_binner12_Re... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115324297; Sample name: ERR770992_binner12_Refined_2; SRA: ERS18321483

Organism: Candidatus Pelagibacter ubique
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Candidatus Pelagibacterales; Candidatus Pelagibacteraceae; Candidatus Pelagibacter

Attributes

broad-scale environmental context	water
collection date	2014-06-21T11:30:00+00
environmental medium	osd
investigation type	metagenome-assembled genome
project name	Sequencing of amplicon and metagenome samples from the main OSD event, representing joint effort of marine sampling stations around the world. The OSD campaign aims to analyze marine microbial community compositions and embedded functional traits on a single day, the solstice on 2014-06-21.
geographic location	not provided
isolation source	marine metagenome
assembly software	metaspades_v3.10.0
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	Candidatus Pelagibacter ubique
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived from	SAMEA3275586
geographic location (longitude)	-69.5781 DD
taxonomic identity marker	multi-marker approach
binning parameters	default
completeness score	82.85 %
contamination score	0.73 %
geographic location (latitude)	43.8604 DD
scientific_name	Candidatus Pelagibacter ubique
local environmental context	ocean
metagenomic source	marine metagenome
sequencing method	Illumina MiSeq
completeness software	CheckM2_v1.0.1

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run ERR770992 of study ERP009703.