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lake microbial community

Identifiers
BioSample: SAMEA115399771; SRA: ERS18420352
Organism
Aeromonas bestiarum
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas
Attributes
broad-scale environmental contextfreshwater biome
collection date2019-11-07
environmental mediumfresh water
geographic locationSwitzerland
investigation typemetagenome-assembled genome
isolation sourcelake microbial community
project namePRJEB73309
sample namecycles.exp.s136
ENA first public2024-04-20
ENA-CHECKLISTERC000050
INSDC center nameDepartment of Plant and Microbial Biology
INSDC statuspublic
Submitter Idcycles.exp.s136
assembly softwaremetaSPAdes v3.13.1
binning parameterscoverage
binning softwareMetaBAT2
completeness score37.93
completeness softwareCheckM v1.2.2
contamination score0
geographic location (latitude)47.2903783
geographic location (longitude)8.5965403
local environmental contextfreshwater lake biome
metagenomic sourcelake water metagenome
sample derived fromERS18355662
scientific_nameAeromonas bestiarum
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

C7.microcosm.3.Aeromonas bestiarum

BioProject
PRJEB73309 Raw sequences to test the effect of dispersal on the community assembly of aquatic microbes. Swiss National Science Foundation (SNSF), grant number: 31003A_182336
Retrieve all samples from this project

Submission
EBI; 2024-06-04
Accession:
SAMEA115399771
ID:
41665891

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