lake microbial community

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Result Filters

Organism: Pseudomonas azotoformans
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group

Attributes

broad-scale environmental context	freshwater biome
collection date	2019-11-07
environmental medium	fresh water
geographic location	Switzerland
investigation type	metagenome-assembled genome
isolation source	lake microbial community
project name	PRJEB73309
sample name	cycles.exp.s176
ENA first public	2024-04-20
ENA-CHECKLIST	ERC000050
INSDC center name	Department of Plant and Microbial Biology
INSDC status	public
Submitter Id	cycles.exp.s176
assembly software	metaSPAdes v3.13.1
binning parameters	coverage
binning software	MetaBAT2
completeness score	36.21
completeness software	CheckM v1.2.2
contamination score	1.72
geographic location (latitude)	47.2903783
geographic location (longitude)	8.5965403
local environmental context	freshwater lake biome
metagenomic source	lake water metagenome
sample derived from	ERS18355678
scientific_name	Pseudomonas azotoformans
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB73309 Raw sequences to test the effect of dispersal on the community assembly of aquatic microbes. Swiss National Science Foundation (SNSF), grant number: 31003A_182336
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