MH-08apr19-22: freshwater MAG from Lake Medard

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Candidatus Planktophila sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Candidatus Nanopelagicales; Candidatus Nanopelagicaceae; Candidatus Planktophila; unclassified Candidatus Planktophila

Attributes

broad-scale environmental context	freshwater biome
collection date	2019-04-08
environmental medium	artificial lake
geographic location	Czechia
isolation source	freshwater lake
project name	PRJEB35640
sample name	MH-08apr19-22
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2024-07-23T12:49:33Z
ENA-LAST-UPDATE	2024-07-23T12:49:33Z
External Id	SAMEA115861913
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2024-07-23T12:49:33Z
INSDC last update	2024-07-23T12:49:33Z
INSDC status	public
Submitter Id	MH-08apr19-22
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Megahit
binning parameters	coverage and kmer
binning software	Metabat2
completeness score	58.62
completeness software	CheckM
contamination score	0
geographic location (latitude)	50.166667
geographic location (longitude)	12.583333
local environmental context	freshwater lake biome
metagenomic source	freshwater metagenome
sample derived from	ERS4065079
scientific_name	Candidatus Planktophila sp.
taxonomic identity marker	multi-marker