ZE-13nov19-LR-44: freshwater MAG from Lake Zurich

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Result Filters

Organism: Candidatus Methylopumilus sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Nitrosomonadales; Methylophilaceae; Candidatus Methylopumilus; unclassified Candidatus Methylopumilus

Attributes

broad-scale environmental context	freshwater biome
collection date	2019-11-13
environmental medium	natural lake
geographic location	Switzerland
isolation source	freshwater lake
project name	PRJEB35640
sample name	ZE-13nov19-LR-44
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2024-07-23T12:49:34Z
ENA-LAST-UPDATE	2024-07-23T12:49:34Z
External Id	SAMEA115862080
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2024-07-23T12:49:34Z
INSDC last update	2024-07-23T12:49:34Z
INSDC status	public
Submitter Id	ZE-13nov19-LR-44
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Flye
binning parameters	coverage and kmer
binning software	Metabat2
completeness score	77.11
completeness software	CheckM
contamination score	0.05
geographic location (latitude)	47.3
geographic location (longitude)	8.566667
local environmental context	freshwater lake biome
metagenomic source	freshwater metagenome
sample derived from	ERS6344560
scientific_name	Candidatus Methylopumilus sp.
taxonomic identity marker	multi-marker