Metagenome-assembled genome: private_T1888_metawra... - BioSample

Metagenome-assembled genome: private_T1888_metawrap_bin.15

Organism: uncultured Lichenihabitans sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Lichenihabitantaceae; Lichenihabitans; environmental samples

Attributes

broad-scale environmental context	Thallus of Puttea exsequens lichen
collection date	2017-09-30
environmental medium	lichen thallus
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	The genome sequences provided here are part of a study on the CAZyme arsenal of lichen fungal symbionts from the Lecanoromycetes in the context of other (previously published) fungi from other groups of the Ascomycota.
sample name	private_T1888_metawrap_bin.15
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	private_T1888_metawrap_bin.15
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	73.04
completeness software	CheckM_v1.1.3
contamination score	1.31
geographic location (latitude)	56.58416700
geographic location (longitude)	-119.70971700
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN25961862
scientific_name	uncultured Lichenihabitans sp.
sequencing method	Illumina HiSeq X
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR18162832 of study SRP361743.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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