Metagenome-assembled genome: public_SRR11456914_me... - BioSample

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Result Filters

Organism: uncultured Rhizobacter sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiales genera incertae sedis; Rhizobacter; environmental samples

Attributes

broad-scale environmental context	Thallus of Peltigera extenuata lichen
collection date	2013-08-16
environmental medium	lichen thallus
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Metagenomics of the Peltigera-Nostoc symbiosis
sample name	public_SRR11456914_metawrap_bin.2
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR11456914_metawrap_bin.2
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	97.89
completeness software	CheckM_v1.1.3
contamination score	1.87
geographic location (latitude)	58.00000000
geographic location (longitude)	-111.00000000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN14483416
scientific_name	uncultured Rhizobacter sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR11456914 of study SRP254726.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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