Metagenome-assembled genome: public_SRR12240179_me... - BioSample

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Result Filters

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

broad-scale environmental context	Thallus of Xanthoparmelia aff mexicana lichen
collection date	2004
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	short, metagnomic reads from lichen thalli
sample name	public_SRR12240179_metawrap_bin.3
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR12240179_metawrap_bin.3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	86.05
completeness software	CheckM_v1.1.3
contamination score	2.24
geographic location (latitude)	not provided
geographic location (longitude)	not provided
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN15548972
scientific_name	uncultured Sphingomonas sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR12240179 of study SRP272267.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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