Metagenome-assembled genome: public_SRR14722143_me... - BioSample

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Result Filters

Organism: uncultured Allosphingosinicella sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Allosphingosinicella; environmental samples

Attributes

broad-scale environmental context	Thallus of Zwackhia viridis lichen
collection date	2016-03-19
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Genome sequences from the NSF Dimensions in Biodiversity Grant to study the Lichens of the Southern Appalachians
sample name	public_SRR14722143_metawrap_bin.3
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR14722143_metawrap_bin.3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	73.44
completeness software	CheckM_v1.1.3
contamination score	2.0
geographic location (latitude)	35.40720000
geographic location (longitude)	-83.59310000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN19302577
scientific_name	uncultured Allosphingosinicella sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14722143 of study SRP322526.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
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