Metagenome-assembled genome: public_SRR14721957_me... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: Ephebe solida
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Lichinomycetes; Lichinales; Porocyphaceae; Ephebe

Attributes

broad-scale environmental context	Thallus of Ephebe solida lichen
collection date	2016-12-17
environmental medium	lichen thallus
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	Genome sequences from the NSF Dimensions in Biodiversity Grant to study the Lichens of the Southern Appalachians
sample name	public_SRR14721957_metabat2_bin.1
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	public_SRR14721957_metabat2_bin.1
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	72.93
completeness software	EukCC_v2
contamination score	1.13
geographic location (latitude)	34.37360000
geographic location (longitude)	-85.69220000
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN19302748
scientific_name	Ephebe solida
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR14721957 of study SRP322526.

BioProject: PRJEB77567 Metagenome-assembled genomes derived from Tagirdzhanova et al. 2024: Microbial occurrence and symbiont detection in lichen metagenomes
Retrieve all samples from this project