Fram Strait/WSC water column MAG - FRAM_RAS_F4_01_... - BioSample

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Result Filters

Organism: Loktanella salsilacus
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Loktanella

Attributes

broad-scale environmental context	marine pelagic biome [ENVO:01000023]
collection date	2018-01-27
depth	87.49
environmental medium	sea water [ENVO:00002149]
geographic location	Svalbard
isolation source	seawater
project name	FRAM_RAS_WSC_F4_metagenomes
sample name	FRAM_RAS_F4_01_1718-MAG_4
ENA first public	2024-10-09
ENA-CHECKLIST	ERC000047
INSDC center name	MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY
INSDC status	public
Submitter Id	FRAM_RAS_F4_01_1718-MAG_4
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	Flye v2.9.1
binning parameters	Default settings
binning software	Metabat2 v2.15
completeness score	96.36
completeness software	CheckM v1.2.0
contamination score	1.66
geographic location (latitude)	79.01
geographic location (longitude)	6.96
local environmental context	marine photic zone [ENVO:00000209]
metagenomic source	marine metagenome
sample derived from	ERR12117671,ERS16474205
scientific_name	Loktanella salsilacus
taxonomic identity marker	16S rRNA gene and multi-gene marker approach

Description: Metagenome-assembled genome generated from a water column sample collected in West Spitsbergen Current, Fram Strait - specifically derived from ERR12117671,ERS16474205