Green_AD.bin.2 metagenome-assembled genome

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Result Filters

Organism: Xanthomonas sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Xanthomonas; unclassified Xanthomonas

Attributes

broad-scale environmental context	Terrestrial biome
collection date	2021-09
environmental medium	Soil
geographic location	Canada
isolation source	Bryophytes in the boreal forest
project name	Boreal moss-microbe interactions are revealed through metagenome assembly of novel bacterial species
sample name	Green_AD.bin.2
ENA first public	2024-12-17
ENA-CHECKLIST	ERC000050
INSDC center name	UdS
INSDC status	public
Submitter Id	Green_AD.bin.2
assembly software	metaSPAdes;3.15.4;-k21,33,55 --only-assembler, default parameters otherwise, MEGAHIT;1.2.9;default parameters, run on reads not assembled by metaSPAdes
binning parameters	Metabat: --metabat_len=1000, Maxbin: -markerset=107, -min_contig_length=1000, CONCOCT: -l 1000
binning software	MetaBAT:2.12.1,CONCOCT:1.1.0,MaxBin:2.2.4,MetaWRAP_bin_refinement:1.99
completeness score	68.03
completeness software	CheckM:1.0.114
contamination score	2.19
geographic location (latitude)	51.7040721
geographic location (longitude)	76.0521982
local environmental context	Vegetation layer
metagenomic source	moss metagenome
sample derived from	ERS20302192
scientific_name	Xanthomonas sp.