Metagenome-assembled genome: DRR092713_bin.92_CONC... - BioSample

Metagenome-assembled genome: DRR092713_bin.92_CONCOCT_v1.1_MAG

Organism: uncultured Verrucomicrobiota bacterium
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; environmental samples

Attributes

collection date	2011-12-11
broad-scale environmental context	Environmental
local-scale environmental context	Aquatic
environmental medium	Marine
geographic location	Pacific Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	The trench microbiome project analyzed planktonic microbiomes associated with sea surface to hadal waters along the water columns on Mariana, Ogasawara (Izu-Bonin), Japan and Chishima (Kuril) Trenches.
sample name	DRR092713_bin.92_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14074641
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:25Z
INSDC last update	2023-01-03T00:32:25Z
INSDC status	public
Submitter Id	DRR092713_bin.92_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	84.14
completeness software	CheckM
contamination score	5.52
geographic location (latitude)	29.15
geographic location (longitude)	142.8012
metagenomic source	marine metagenome
sample derived from	SAMD00080414
scientific_name	uncultured Verrucomicrobia bacterium
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run DRR092713 of study DRP003768.

BioProject: PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
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