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Metagenome-assembled genome: ERR599090_bin.119_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14075237; SRA: ERS11678466
Organism
uncultured Cellvibrionales bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Cellvibrionales; environmental samples
Attributes
collection date2011-01-06
broad-scale environmental contextEnvironmental
local-scale environmental contextAquatic
environmental mediumMarine
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameSeawater was filtered from different depths to retain small cell sizes (Bacteria Organisms). The DNA was extracted and submitted to high throughput sequencing.
sample nameERR599090_bin.119_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14075237
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:34Z
INSDC last update2023-01-03T00:32:34Z
INSDC statuspublic
Submitter IdERR599090_bin.119_CONCOCT_v1.1_MAG
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwaremetaSPAdes
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.59
completeness softwareCheckM
contamination score0.74
geographic location (latitude)-62.0385
geographic location (longitude)-49.529
metagenomic sourcemarine metagenome
sample derived fromSAMEA2621509
scientific_nameuncultured Cellvibrionales bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR599090 of study ERP001736.

BioProject
PRJEB51078 Large-scale analysis of novel cellular microbes from the marine biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14075237
ID:
32557152

BioProject Nucleotide

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