U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: ERR982844_bin.13_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14080717; SRA: ERS11683973
Organism
uncultured Enterorhabdus sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Enterorhabdus; environmental samples
Attributes
collection date2011-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextMammals
environmental mediumDigestive system
geographic locationDenmark
investigation typemetagenome-assembled genome
isolation sourcegut metagenome
project nameWe used C57BL/6JBomTac (BL6) and 129S6/SvEvTac (Sv129) mice, known as obesity prone and obesity resistant, respectively, to dissociate changes in the gut microbiota associated with HF feeding from those associated with obesity. Using HiSeq-based whole genome sequencing we identified taxonomic and functional differences in the gut microbiota of the two mouse strains fed regular low fat or HF diets. HF feeding rather than obesity development led to distinct changes in the microbiota.
sample nameERR982844_bin.13_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14080717
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:01Z
INSDC last update2023-01-03T00:33:01Z
INSDC statuspublic
Submitter IdERR982844_bin.13_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score78.41
completeness softwareCheckM
contamination score4.46
geographic location (latitude)55.676098
geographic location (longitude)12.568337
metagenomic sourcegut metagenome
sample derived fromSAMEA3504132
scientific_nameuncultured Enterorhabdus sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR982844 of study ERP011540.

BioProject
PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14080717
ID:
32558405

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center