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Metagenome-assembled genome: SRR5275432_bin.53_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14081056; SRA: ERS11684311
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
collection date2011-12-13
broad-scale environmental contextHost-associated
local-scale environmental contextMammals
environmental mediumDigestive system
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcegut metagenome
project nameThe presence of advanced fibrosis in nonalcoholic fatty liver disease (NAFLD) is the most important predictor of liver mortality. The aim of this study was to examine the diagnostic</p><p>accuracy of a gut-microbiota derived metagenomic signature for detecting the presence of advanced fibrosis in NAFLD. In this prospective study, we characterized the microbiome signatures associated with advanced fibrosis (defined as stage 3 or 4 fibrosis) in uniquely well characterized biopsy- and imaging-phenotyped patients with NAFLD. Gut microbiome</p><p>compositions of the patients were determined using whole-genome shotgun sequencing of DNA extracted from stool samples.
sample nameSRR5275432_bin.53_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14081056
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:56Z
INSDC last update2023-01-03T00:32:56Z
INSDC statuspublic
Submitter IdSRR5275432_bin.53_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score80.76
completeness softwareCheckM
contamination score2.46
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcegut metagenome
sample derived fromSAMN06328429
scientific_nameuncultured Clostridia bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5275432 of study SRP100446.

BioProject
PRJEB51895 Large-scale analysis of novel cellular microbes from the mammal gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14081056
ID:
32558743

BioProject Nucleotide

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