Metagenome-assembled genome: SRR3330210_bin.172_CO... - BioSample

Metagenome-assembled genome: SRR3330210_bin.172_CONCOCT_v1.1_MAG

Organism: Enterobacter cloacae
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex

Attributes

collection date	2014-10-29
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	Singapore
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	To reveal the transition of structure and function of microbial community in forwards osmosis anaerobic membrane bioreactors
sample name	SRR3330210_bin.172_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14081830
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:45Z
INSDC last update	2023-01-03T00:32:45Z
INSDC status	public
Submitter Id	SRR3330210_bin.172_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.45
completeness software	CheckM
contamination score	1.39
geographic location (latitude)	1.3483
geographic location (longitude)	103.6831
metagenomic source	metagenome
sample derived from	SAMN04604785
scientific_name	Enterobacter cloacae
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3330210 of study SRP072814.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project