Metagenome-assembled genome: SRR5457059_bin.33_CON... - BioSample

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Result Filters

Organism: uncultured Actinomycetes bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; environmental samples

Attributes

collection date	2013-09-29
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Microbial Dark Matter project phase II - stepping deeper into unknown territory
sample name	SRR5457059_bin.33_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082088
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:20Z
INSDC last update	2023-01-03T00:32:20Z
INSDC status	public
Submitter Id	SRR5457059_bin.33_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	85.47
completeness software	CheckM
contamination score	2.56
geographic location (latitude)	51.1699
geographic location (longitude)	-116.1578
metagenomic source	metagenome
sample derived from	SAMN06266324
scientific_name	uncultured actinobacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5457059 of study SRP104224.