U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR6231188_bin.42_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082389; SRA: ERS11685525
Organism
uncultured Flavobacterium sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium; environmental samples
Attributes
collection date2016-07-28
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameWastewater treatment plants (WWTPs) are thought to be potential incubators of antibiotic resistance. Persistence of commonly used antibiotics in wastewater may increase the potential for survival and horizontal transfer of adaptive genes in bacterial populations, some of which may pose a threat to human health. In this study, we assayed the concentrations of ten common antibiotics in wastewater influents, treatment stage influents and effluents, and upstream and downstream surface waters from two Charlotte area wastewater plants, including residential and hospital trunkline locations. We performed whole genome shotgun sequencing, to assay the taxonomic and resistome compositions at each of these sites across four time points during the late winter to mid-summer of 2016.
sample nameSRR6231188_bin.42_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082389
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:33Z
INSDC last update2023-01-03T00:32:33Z
INSDC statuspublic
Submitter IdSRR6231188_bin.42_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.87
completeness softwareCheckM
contamination score3.37
geographic location (latitude)35.33544
geographic location (longitude)-80.69757
metagenomic sourcemetagenome
sample derived fromSAMN07839317
scientific_nameuncultured Flavobacterium sp.
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6231188 of study SRP121672.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082389
ID:
32559685

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center