U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: SRR6713629_bin.86_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082479; SRA: ERS11685614
Organism
uncultured Firmicutes bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; environmental samples
Attributes
collection date2015-12-17
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameMonitoring the dynamics of ARGs during thermophilic composting
sample nameSRR6713629_bin.86_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082479
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:33Z
INSDC last update2023-01-03T00:32:33Z
INSDC statuspublic
Submitter IdSRR6713629_bin.86_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score91.75
completeness softwareCheckM
contamination score3.02
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcemetagenome
sample derived fromSAMN08517347
scientific_nameuncultured Firmicutes bacterium
sequencing methodHiSeq X Ten
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6713629 of study SRP132747.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082479
ID:
32559774

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center