uncultured Candidatus Saccharimonas sp.

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Result Filters

Organism: uncultured Candidatus Saccharimonas sp.
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; Candidatus Saccharimonadia; Candidatus Saccharimonadales; Candidatus Saccharimonadaceae; Candidatus Saccharimonas; environmental samples

Attributes

collection date	2018-02-19
broad-scale environmental context	freshwater lake
local-scale environmental context	pond
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35640
sample name	Jr-19feb18-57
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14306384
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:13Z
INSDC last update	2022-06-30T00:19:13Z
INSDC status	public
Submitter Id	Jr-19feb18-57
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	54.67
completeness software	checkm
contamination score	0.14
geographic location (latitude)	48.616034
geographic location (longitude)	14.676594
metagenomic source	freshwater metagenome
sample derived from	ERS6351407
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach