uncultured Candidatus Saccharimonas sp.

Organism: uncultured Candidatus Saccharimonas sp.
cellular organisms; Bacteria; Bacteria incertae sedis; Bacteria candidate phyla; Candidatus Saccharibacteria; Candidatus Saccharimonadia; Candidatus Saccharimonadales; Candidatus Saccharimonadaceae; Candidatus Saccharimonas; environmental samples

Attributes

collection date	2017-06-27
broad-scale environmental context	freshwater lake
local-scale environmental context	reservoir
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB35770
sample name	RH-27jun17-331
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-06-30
ENA-LAST-UPDATE	2022-06-30
External Id	SAMEA14306496
INSDC center alias	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC center name	BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO
INSDC first public	2022-06-30T00:19:15Z
INSDC last update	2022-06-30T00:19:15Z
INSDC status	public
Submitter Id	RH-27jun17-331
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	MEGAHIT; kmer set 29,49,69,89,109,119,129,149
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	53.24
completeness software	checkm
contamination score	2.14
geographic location (latitude)	48.846361
geographic location (longitude)	14.487639
metagenomic source	freshwater metagenome
sample derived from	ERS4146242
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

BioProject: PRJEB35640 Freshwater metagenomes from different European and Asian lakes
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BioSample