ERS11624162

Organism: Sandarakinorhabdus limnophila DSM 17366
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingosinicellaceae; Sandarakinorhabdus; Sandarakinorhabdus limnophila

Attributes

collection date	2020-05-17
broad-scale environmental context	freshwater lake
local-scale environmental context	lake
environmental medium	fresh water
geographic location	Czech Republic
investigation type	metagenome-assembled genome
isolation source	Freshwater lake
project name	PRJEB49198
sample name	JJ-MAC3-364-4-m2-bin103
ENA first public	2024-04-18
ENA-CHECKLIST	ERC000047
External Id	SAMEA14447310
INSDC center name	Biology Centre CAS
INSDC last update	2022-05-24T13:45:04Z
INSDC status	public
Submitter Id	JJ-MAC3-364-4-m2-bin103
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	MEGAHIT
binning parameters	coverage and kmer
binning software	MetaBAT2
completeness score	90.3
completeness software	checkm
contamination score	0.22
geographic location (latitude)	50.58204579
geographic location (longitude)	14.65010428
metagenomic source	freshwater metagenome
sample derived from	ERS11624162
scientific_name	Sandarakinorhabdus limnophila DSM 17366
sequencing method	Illumina NovaSeq 6000
taxonomic identity marker	multi-marker approach

Description: JJ-MAC3-364-4-m2-bin103 - Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sandarakinorhabdus; Sandarakinorhabdus limnophila

BioProject: PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
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BioSample