U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERS11624168

Identifiers
BioSample: SAMEA14447346; SRA: ERS12066172
Organism
Bosea thiooxidans
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Boseaceae; Bosea
Attributes
collection date2019-04-16
broad-scale environmental contextfreshwater lake
local-scale environmental contextlake
environmental mediumfresh water
geographic locationCzech Republic
investigation typemetagenome-assembled genome
isolation sourceFreshwater lake
project namePRJEB49198
sample nameJJ-MIC7-10-2-m1-bin348
ENA first public2024-04-18
ENA-CHECKLISTERC000047
External IdSAMEA14447346
INSDC center nameBiology Centre CAS
INSDC last update2022-05-24T13:45:05Z
INSDC statuspublic
Submitter IdJJ-MIC7-10-2-m1-bin348
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly softwareMEGAHIT
binning parameterscoverage and kmer
binning softwareMetaBAT2
completeness score95.66
completeness softwarecheckm
contamination score3.12
geographic location (latitude)50.65531976
geographic location (longitude)13.95031488
metagenomic sourcefreshwater metagenome
sample derived fromERS11624168
scientific_nameBosea thiooxidans
sequencing methodIllumina NovaSeq 6000
taxonomic identity markermulti-marker approach
Description

JJ-MIC7-10-2-m1-bin348 - Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea

BioProject
PRJEB49198 Illuminating the ecology of freshwater picocyanobacteria through a genome-resolved taxonomic framework
Retrieve all samples from this project

Submission
EBI; 2024-04-20
Accession:
SAMEA14447346
ID:
41025706

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center