Lobaria_concoct_40_sub

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Result Filters

Organism: Myxococcales bacterium
cellular organisms; Bacteria; Pseudomonadati; Myxococcota; Myxococcia; Myxococcales; unclassified Myxococcales

Attributes

collection date	2012-10-12
broad-scale environmental context	host organism
local-scale environmental context	organic feature
environmental medium	organic material
geographic location	Austria
investigation type	metagenome-assembled genome
isolation source	Lobaria metagenome
project name	Reconstruction of Bacterial Metagenome-Assembled Genome Sequences from Different Lichen Metagenomes
sample name	Lichen_MAGs_lobaria2
ENA-CHECKLIST	ERC000050
ENA-FIRST-PUBLIC	2020-05-28T04:05:20Z
ENA-LAST-UPDATE	2020-05-27T10:43:48Z
External Id	SAMEA6862690
INSDC center name	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC first public	2020-05-28T04:05:20Z
INSDC last update	2020-05-27T10:43:48Z
INSDC status	public
Submitter Id	Lichen_MAGs_lobaria2
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	concoct
completeness score	90.75
completeness software	checkm
contamination score	3.06
geographic location (latitude)	47.63528
geographic location (longitude)	14.74583
metagenomic source	Lobaria pulmonaria
sample derived from	ERS4590032
scientific_name	Myxococcales bacterium
sequencing method	Illumina HiSeq
taxonomic identity marker	multi-markers approach using the Bin Annotation Tool