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Australian marsupial phylogenetic study. Bioplatforms Australia and Oz Mammals Genomics.

Identifiers
BioSample: SAMEA7321122; Sample name: 53402; SRA: ERS5079658
Organism
Trichosurus vulpecula (common brushtail)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Diprotodontia; Phalangeridae; Trichosurus
Attributes
investigation typephylogenetic study
geographic locationAustralia
tissuemuscle
sub specieshypoleucus
identified byB Maryan
sexmale
bioproject_accessionPRJEB39788
sequencing methodIllumina SBS, short PE reads
geographic location (region and locality)Western Australia
BPA_sample_ID40696
BPA_library_ID53402
voucher_numberWAM M54158
tissue_numberWAM M54158
voucher_or_tissue_numberWAM M54158
institution_nameWestern Australian Museum
collectionMammal
tissue_preservationethanol
phylumChordata
classMammalia
orderDiprotodontia
familyPhalangeridae
genusTrichosurus
speciesvulpecula
wild_captiveunknown
state_or_regionWestern Australia
location_textManjimup, 250m W along Kingston Rd from Verilee Rd intersection
decimal_latitude-35.09
decimal_longitude116.4
DNA_extraction_methodsalting out
TCCP_ID53402_AHGVYGBCX2_GTCCGGC_S64
depthmean108.99
depthmedian79
totalreadsstart6479410
totalmapped2tgt0.3523
totalpaired0.3244
CALLABLE1691252
NO_COVERAGE224
LOW_COVERAGE150984
ReadLength100bp
AtlasLivingAustraliahttps://biocache.ala.org.au/occurrences/84c411b7-3859-4b8e-8ce1-205fc831238e
ENA-FIRST-PUBLIC2021-01-05
ENA-LAST-UPDATE2020-09-25
BioProject
PRJEB39788 Australian marsupial phylogeny
Retrieve all samples from this project

Submission
EBI; 2021-01-06
Accession:
SAMEA7321122
ID:
17239579

BioProject Nucleotide

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