Australian marsupial phylogenetic study. Bioplatfo... - BioSample

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Result Filters

Organism: Pseudantechinus ningbing (ningbing antechinus)
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Metatheria; Dasyuromorphia; Dasyuridae; Pseudantechinus

Attributes

geographic location	Australia
investigation type	phylogenetic study
sample name	55311
sex	not determined
tissue	liver
AtlasLivingAustralia	https://biocache.ala.org.au/occurrences/3107966c-7032-4cb8-96d3-15659aa016fd
BPA_library_ID	55311
BPA_sample_ID	41900
CALLABLE	1514227
DNA extraction method	salting out
ENA-CHECKLIST	ERC000011
ENA-FIRST-PUBLIC	2021-01-05T04:27:29Z
ENA-LAST-UPDATE	2020-09-25T00:41:57Z
External Id	SAMEA7321294
INSDC center name	AUSTRALIAN NATIONAL UNIVERSITY
INSDC first public	2021-01-05T04:27:29Z
INSDC last update	2020-09-25T00:41:57Z
INSDC status	public
LOW_COVERAGE	127304
NO_COVERAGE	128
ReadLength	150bp
Submitter Id	55311
TCCP_ID	55311_HWWJFAFXY_AGAATTA_S81
bioproject_accession	PRJEB39788
class	Mammalia
collection	Mammal
common name	ningbing antechinus
depthmean	182.32
depthmedian	129
family	Dasyuridae
genus	Pseudantechinus
geographic location (region and locality)	Western Australia
institution_name	Australian Biological Tissue Collection, South Australian Museum
location_text	Mitchell Plateau
order	Dasyuromorphia
phylum	Chordata
scientific_name	Pseudantechinus ningbing
sequencing method	Illumina SBS, short PE reads
species	ningbing
state_or_region	Western Australia
tissue_number	ABTC07729
tissue_preservation	ethanol \| frozen
totalmapped2tgt	0.7196
totalpaired	0.7016
totalreadsstart	3303809
voucher_number	WAM M21989
voucher_or_tissue_number	WAM M21989