MAG30

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Result Filters

Organism: uncultured Akkermansia sp.
cellular organisms; Bacteria; Pseudomonadati; PVC group; Verrucomicrobiota; Verrucomicrobiia; Verrucomicrobiales; Akkermansiaceae; Akkermansia; environmental samples

Attributes

collection date	2019
broad-scale environmental context	terrestrial biome
local-scale environmental context	host-associated habitat
environmental medium	ENVO:feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes (MAGs) from the yak faecal microbiota
sample name	MAG30
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-09-20T08:05:11Z
ENA-LAST-UPDATE	2020-09-19T12:52:52Z
External Id	SAMEA7322049
INSDC center name	Shanghai MasScience Genomics Core
INSDC first public	2020-09-20T08:05:11Z
INSDC last update	2020-09-19T12:52:52Z
INSDC status	public
Submitter Id	MAG30
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	Megahit
binning parameters	contigs longer than 2 kb
binning software	Metabat2 and Maxbin2
common name	Akkermansia sp.
completeness score	88.46
completeness software	CheckM
contamination score	2.4
geographic location (latitude)	31.2
geographic location (longitude)	96.56
metagenomic source	feces metagenome
sample derived from	ERS5054898-ERS5054902
scientific_name	uncultured Akkermansia sp.
sequencing method	Illumina
taxonomic identity marker	multi-marker approach