MGBC113668

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Allobaculum sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Allobaculum; environmental samples

Attributes

collection date	2016-09
broad-scale environmental context	mouse gut
local-scale environmental context	mouse-associated habitat
environmental medium	Faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	feces
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC113668
ENA first public	2021-06-18
ENA last update	2021-06-18
ENA-CHECKLIST	ERC000047
External Id	SAMEA8805245
INSDC center alias	UNIVERSITY OF CAMBRIDGE
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2021-06-18T00:19:13Z
INSDC last update	2021-06-18T00:19:13Z
INSDC status	public
Submitter Id	MGBC113668
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes;3.10.1;default
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	94.34
completeness software	CheckM
contamination score	0.49
geographic location (latitude)	34.15
geographic location (longitude)	108.67
metagenomic source	mouse gut metagenome
sample derived from	SRS3556088
sequencing method	Illumina
taxonomic identity marker	multi-marker approach