MGBC163421

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Result Filters

Organism: uncultured Lachnospiraceae bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; environmental samples

Attributes

collection date	2018-10
broad-scale environmental context	mouse gut
local-scale environmental context	mouse-associated habitat
environmental medium	Proximal colon
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	Proximal colon
project name	Metagenome-assembled genomes from the Mouse Gastrointestinal Bacteria Catalogue
sample name	MGBC163421
ENA first public	2021-06-18
ENA last update	2021-06-18
ENA-CHECKLIST	ERC000047
External Id	SAMEA8805800
INSDC center alias	UNIVERSITY OF CAMBRIDGE
INSDC center name	UNIVERSITY OF CAMBRIDGE
INSDC first public	2021-06-18T00:19:13Z
INSDC last update	2021-06-18T00:19:13Z
INSDC status	public
Submitter Id	MGBC163421
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit;1.1.1-2-g02102e1;default
binning parameters	default parameters, kmer: 4
binning software	metaWRAP (MetaBAT2, MaxBin2 and CONCOCT)
completeness score	97.58
completeness software	CheckM
contamination score	1.15
geographic location (latitude)	34.07516
geographic location (longitude)	-118.38109
metagenomic source	mouse gut metagenome
sample derived from	SRS7223931
sequencing method	Illumina
taxonomic identity marker	multi-marker approach