S1C58117_SP162

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Result Filters

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

collection date	2020-10-09
broad-scale environmental context	plant associated biome
local-scale environmental context	phyllosphere
environmental medium	organic material
geographic location	China
investigation type	metagenome-assembled genome
isolation source	phyllosphere_metagenome_of_Oryza sativa
project name	Recovery of metagenome-assembled genomes from 110 rice cultivars
sample name	S1C58117_SP162
ENA first public	2024-10-17
ENA-CHECKLIST	ERC000050
External Id	SAMEA8943817
INSDC center name	INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY
INSDC last update	2021-06-25T13:22:53Z
INSDC status	public
Submitter Id	S1C58117_SP162
assembly software	Megahit
binning parameters	default
binning software	vamb
completeness score	99
completeness software	CheckM
contamination score	1
geographic location (latitude)	N28.8
geographic location (longitude)	E112.2
metagenomic source	plant metagenome
sample derived from	ERS6595551,ERS6595662,ERS6595772
scientific_name	uncultured Sphingomonas sp.
sequencing method	Illumina NovaSeq 6000