Metagenome-assembled genome: ERR2098373_bin.38_Met... - BioSample

Metagenome-assembled genome: ERR2098373_bin.38_MetaBAT_v2.12.1_MAG

Identifiers: BioSample: SAMEA9694092; SRA: ERS7418339

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

collection date	2017-05-30
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	This study includes experiments from the following five sequencing strategies: 1) Shotgun DNA sequencing; 2) Amplicon sequencing after 18S amplification by PCR using 1391F/EukB primer set. Library were constructed according to Illumina Library protocol without any sizing; 3) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol without any sizing; 4) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 450-650 bp fragments; and 5) Amplicon sequencing after 16S amplification by PCR using 515F/926R primer set. Library were constructed according to Illumina Library protocol with a sizing step selecting the 650-850 bp fragments.
sample name	ERR2098373_bin.38_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694092
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	ERR2098373_bin.38_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.10.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	62.85
completeness software	CheckM
contamination score	0.57
geographic location (latitude)	42.487
geographic location (longitude)	3.169
metagenomic source	marine metagenome
sample derived from	SAMEA104212361
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2098373 of study ERP090011.

BioProject: PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
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Submission: EBI; 2021-09-25

Accession:: SAMEA9694092
ID:: 21732437

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Metagenome-assembled genome: ERR2098373_bin.38_MetaBAT_v2.12.1_MAG

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