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Metagenome-assembled genome: SRR3580189_bin.9_MetaBAT_v2.12.1_MAG

Identifiers
BioSample: SAMEA9694124; SRA: ERS7418371
Organism
uncultured Ulvibacter sp.
cellular organisms; Bacteria; Pseudomonadati; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Ulvibacter; environmental samples
Attributes
collection date2013-07-27
broad-scale environmental contextaquatic
local-scale environmental contextmarine
environmental mediumwater
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemarine metagenome
project nameIn this study, we simulate the Deepwater Horizon oil spill in a laboratory system, with the indigenous seawater from the spill site and depth, Macondo oil, and dispersant (Corexit 9500) used during the spill. Successive samples were taken for chemical and metagenomic studies. From the assembled contigs, we isolated the dominant Oceanospirillaceae genome. This study showed that the succession of the microbial community coincide with the genomes’ use of hydrocarbon substrates. In general, n-alkane users will rise first, succeeded by mono-ring aromotics, then by multi-ring aromatics. The succession pattern was probably controlled by nutrient availability and the metabolic rates that the group of substrates can sustain. Multiple genomes of Colwellia, Cycloclasticus, members of Gamma-Proteobacteria, flavor bacteria and Rhodobacteria were also resolved, providing insights on potential cooperation or competition in the environment among closely related bacteria.
sample nameSRR3580189_bin.9_MetaBAT_v2.12.1_MAG
ENA first public2021-09-16
ENA last update2021-09-16
ENA-CHECKLISTERC000047
External IdSAMEA9694124
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2021-09-16T16:25:21Z
INSDC last update2021-09-16T16:25:21Z
INSDC statuspublic
Submitter IdSRR3580189_bin.9_MetaBAT_v2.12.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.11.1
binning parametersDefault
binning softwareMetaBAT v2.12.1
broker nameEMG broker account, EMBL-EBI
completeness score89.94
completeness softwareCheckM
contamination score1.81
geographic location (latitude)28.74
geographic location (longitude)-88.37
metagenomic sourcemarine metagenome
sample derived fromSAMN04961126
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3580189 of study SRP075617.

BioProject
PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
Retrieve all samples from this project

Submission
EBI; 2021-09-25
Accession:
SAMEA9694124
ID:
21732906

BioProject Nucleotide

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