Metagenome-assembled genome: SRR6854295_bin.10_Met... - BioSample

Metagenome-assembled genome: SRR6854295_bin.10_MetaBAT_v2.12.1_MAG

Organism: uncultured Synechococcus sp.
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; environmental samples

Attributes

collection date	2016-02-13
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	China
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Isolated Synechococcus cultures frequently contain associated heterotrophic bacteria, and present a good and relevant research system to investigate the interactions of photoautotrophs-heterotrophs. Metagenomic sequences from microbial community co-cultured with a Synechococcus XM-24.
sample name	SRR6854295_bin.10_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694298
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:21Z
INSDC last update	2021-09-16T16:25:21Z
INSDC status	public
Submitter Id	SRR6854295_bin.10_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.55
completeness software	CheckM
contamination score	0.54
geographic location (latitude)	24.46
geographic location (longitude)	118.1
metagenomic source	marine metagenome
sample derived from	SAMN08731212
sequencing method	Illumina MiSeq
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6854295 of study SRP141386.

BioProject: PRJEB37807 Uncultured novel prokaryotic genomes associated with with aquatic environments
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