Metagenome-assembled genome: SRR5620817_bin.6_Meta... - BioSample

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Result Filters

Organism: uncultured Rhodobacteraceae bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; environmental samples

Attributes

collection date	2011-05-13
broad-scale environmental context	aquatic
local-scale environmental context	marine
environmental medium	water
geographic location	Atlantic Ocean
investigation type	metagenome-assembled genome
isolation source	marine metagenome
project name	Actively growing bacteria in coastal waters of the west Antarctic Peninsula identified by metatranscriptomic analysis
sample name	SRR5620817_bin.6_MetaBAT_v2.12.1_MAG
ENA first public	2021-09-16
ENA last update	2021-09-16
ENA-CHECKLIST	ERC000047
External Id	SAMEA9694385
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2021-09-16T16:25:22Z
INSDC last update	2021-09-16T16:25:22Z
INSDC status	public
Submitter Id	SRR5620817_bin.6_MetaBAT_v2.12.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	MetaBAT v2.12.1
broker name	EMG broker account, EMBL-EBI
completeness score	86.56
completeness software	CheckM
contamination score	3.11
geographic location (latitude)	-64.8156
geographic location (longitude)	-64.0406
metagenomic source	marine metagenome
sample derived from	SAMN06343906
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5620817 of study SRP108146.